WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C56G2.1e.1 Sequence Name  C56G2.1e.1
Length (nt)  3546   Chromosome Location  III: 6354400-6366661
Chromosome . Primary Identifier  III Chromosome Location . Start  6354400
Chromosome Location . End  6366661 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C56G2.1e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016977 akap-1 C56G2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C56G2.1e C56G2.1e 2304   III: 6354400-6354473

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C56G2.1e.1 6354400 6366661 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon92037   74   III: 6354400-6354473 Caenorhabditis elegans
Exon92041   156   III: 6354801-6354956 Caenorhabditis elegans
Exon92045   73   III: 6355056-6355128 Caenorhabditis elegans
Exon92049   171   III: 6356365-6356535 Caenorhabditis elegans
Exon92053   150   III: 6357089-6357238 Caenorhabditis elegans
Exon92056   60   III: 6357523-6357582 Caenorhabditis elegans
Exon92060   113   III: 6357655-6357767 Caenorhabditis elegans
Exon92064   278   III: 6357813-6358090 Caenorhabditis elegans
Exon92068   125   III: 6358558-6358682 Caenorhabditis elegans
Exon92076   156   III: 6363686-6363841 Caenorhabditis elegans
Exon92081   84   III: 6363900-6363983 Caenorhabditis elegans
Exon92086   334   III: 6364040-6364373 Caenorhabditis elegans
Exon92091   368   III: 6364804-6365171 Caenorhabditis elegans
Exon92096   1404   III: 6365258-6366661 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C56G2.1e.1 6354400 6366661 1

1 Sequence

Length
3546

1 Sequence Ontology Term

Identifier Name Description
transcript