WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C13B9.4a.3 Sequence Name  C13B9.4a.3
Length (nt)  2263   Chromosome Location  III: 6632841-6638848
Chromosome . Primary Identifier  III Chromosome Location . Start  6632841
Chromosome Location . End  6638848 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C13B9.4a.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015735 pdfr-1 C13B9.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C13B9.4a C13B9.4a 1641   III: 6633439-6633466

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C13B9.4a.3 6632841 6638848 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon92895   626   III: 6632841-6633466 Caenorhabditis elegans
Exon92914   71   III: 6634095-6634165 Caenorhabditis elegans
Exon92920   99   III: 6634304-6634402 Caenorhabditis elegans
Exon92933   138   III: 6634451-6634588 Caenorhabditis elegans
Exon92946   90   III: 6634740-6634829 Caenorhabditis elegans
Exon92959   323   III: 6634877-6635199 Caenorhabditis elegans
Exon92972   157   III: 6635246-6635402 Caenorhabditis elegans
Exon92985   157   III: 6635449-6635605 Caenorhabditis elegans
Exon92998   104   III: 6636012-6636115 Caenorhabditis elegans
Exon93011   155   III: 6636402-6636556 Caenorhabditis elegans
Exon93024   123   III: 6638070-6638192 Caenorhabditis elegans
Exon93037   46   III: 6638351-6638396 Caenorhabditis elegans
Exon93050   69   III: 6638492-6638560 Caenorhabditis elegans
Exon93070   105   III: 6638744-6638848 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C13B9.4a.3 6632841 6638848 -1

1 Sequence

Length
2263

1 Sequence Ontology Term

Identifier Name Description
transcript