WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C13B9.4a.2 Sequence Name  C13B9.4a.2
Length (nt)  2961   Chromosome Location  III: 6632841-6652083
Chromosome . Primary Identifier  III Chromosome Location . Start  6632841
Chromosome Location . End  6652083 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C13B9.4a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015735 pdfr-1 C13B9.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C13B9.4a C13B9.4a 1641   III: 6633439-6633466

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C13B9.4a.2 6632841 6652083 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon92897   626   III: 6632841-6633466 Caenorhabditis elegans
Exon92913   71   III: 6634095-6634165 Caenorhabditis elegans
Exon92919   99   III: 6634304-6634402 Caenorhabditis elegans
Exon92932   138   III: 6634451-6634588 Caenorhabditis elegans
Exon92945   90   III: 6634740-6634829 Caenorhabditis elegans
Exon92958   323   III: 6634877-6635199 Caenorhabditis elegans
Exon92971   157   III: 6635246-6635402 Caenorhabditis elegans
Exon92984   157   III: 6635449-6635605 Caenorhabditis elegans
Exon92997   104   III: 6636012-6636115 Caenorhabditis elegans
Exon93010   155   III: 6636402-6636556 Caenorhabditis elegans
Exon93023   123   III: 6638070-6638192 Caenorhabditis elegans
Exon93036   46   III: 6638351-6638396 Caenorhabditis elegans
Exon93049   69   III: 6638492-6638560 Caenorhabditis elegans
Exon93062   103   III: 6638744-6638846 Caenorhabditis elegans
Exon93076   57   III: 6650969-6651025 Caenorhabditis elegans
Exon93083   333   III: 6651103-6651435 Caenorhabditis elegans
Exon93087   310   III: 6651774-6652083 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C13B9.4a.2 6632841 6652083 -1

1 Sequence

Length
2961

1 Sequence Ontology Term

Identifier Name Description
transcript