WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C13B9.4b.2 Sequence Name  C13B9.4b.2
Length (nt)  2188   Chromosome Location  III: 6632884-6638846
Chromosome . Primary Identifier  III Chromosome Location . Start  6632884
Chromosome Location . End  6638846 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C13B9.4b.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015735 pdfr-1 C13B9.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C13B9.4b C13B9.4b 1611   III: 6633439-6633466

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C13B9.4b.2 6632884 6638846 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon92904   583   III: 6632884-6633466 Caenorhabditis elegans
Exon92916   71   III: 6634095-6634165 Caenorhabditis elegans
Exon92922   99   III: 6634304-6634402 Caenorhabditis elegans
Exon92935   138   III: 6634451-6634588 Caenorhabditis elegans
Exon92948   90   III: 6634740-6634829 Caenorhabditis elegans
Exon92961   323   III: 6634877-6635199 Caenorhabditis elegans
Exon92974   157   III: 6635246-6635402 Caenorhabditis elegans
Exon92987   157   III: 6635449-6635605 Caenorhabditis elegans
Exon93000   104   III: 6636012-6636115 Caenorhabditis elegans
Exon93016   125   III: 6636893-6637017 Caenorhabditis elegans
Exon93026   123   III: 6638070-6638192 Caenorhabditis elegans
Exon93039   46   III: 6638351-6638396 Caenorhabditis elegans
Exon93052   69   III: 6638492-6638560 Caenorhabditis elegans
Exon93064   103   III: 6638744-6638846 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C13B9.4b.2 6632884 6638846 -1

1 Sequence

Length
2188

1 Sequence Ontology Term

Identifier Name Description
transcript