WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C13B9.4d Sequence Name  C13B9.4d
Length (nt)  1596   Chromosome Location  III: 6634082-6634165
Chromosome . Primary Identifier  III Chromosome Location . Start  6634082
Chromosome Location . End  6634165
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C13B9.4d

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE48499 PDFR-1, isoform d 60.4 531 Caenorhabditis elegans
 

Other

7 RNAi

WormBase ID
WBRNAi00040427
WBRNAi00027171
WBRNAi00010677
WBRNAi00024543
WBRNAi00024544
WBRNAi00005367
WBRNAi00028838

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C13B9.4d 6634082 6634165 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015735 pdfr-1 C13B9.4 Caenorhabditis elegans

13 Locations


Feature . Primary Identifier
Start End Strand
CDS:C13B9.4d 6634082 6634165 -1
CDS:C13B9.4d 6634304 6634402 -1
CDS:C13B9.4d 6634451 6634588 -1
CDS:C13B9.4d 6634740 6634829 -1
CDS:C13B9.4d 6634877 6635199 -1
CDS:C13B9.4d 6635246 6635402 -1
CDS:C13B9.4d 6635449 6635605 -1
CDS:C13B9.4d 6636012 6636115 -1
CDS:C13B9.4d 6636893 6637017 -1
CDS:C13B9.4d 6638070 6638192 -1
CDS:C13B9.4d 6638351 6638396 -1
CDS:C13B9.4d 6638492 6638560 -1
CDS:C13B9.4d 6638744 6638824 -1

1 Sequence

Length
1596

1 Sequence Ontology Term

Identifier Name Description
CDS  

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C13B9.4d.1 C13B9.4d.1 2318   III: 6632842-6651025
Transcript:C13B9.4d.2 C13B9.4d.2 2251   III: 6632854-6638848
Transcript:C13B9.4d.3 C13B9.4d.3 1776   III: 6633926-6638848