WormMine: Gene WBGene00023224

• WormBase Gene ID: WBGene00023224
• Gene Name: B0280.6
• Sequence Name: B0280.6
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in rect_D and rectal gland cell based on single-cell RNA-seq studies. Is affected by daf-16; ogt-1; and sir-2.1 based on RNA-seq and microarray studies.
• Biotype: SO:0000336
• Genetic Position: :±
• Length (nt): 1020

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00023224

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

7 Allele

• gk964518
• gk963887
• tm11024
• tm11068
• WBVar01852317
• gk669559
• gk467590

1 Chromosome

• WormBase ID: III
• Organism: Caenorhabditis elegans
• Length (nt): 13783801

1 Chromosome Location

• Feature . Primary Identifier: WBGene00023224
• Start: 7105441
• End: 7106460
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIII_7103991..7105440
• Length (nt): 1450
• Chromosome Location: III: 7103991-7105440
• Organism: Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly decreased expression in daf-16(mgDf50) comparing to in N2 at L1 larva stage.	DESeq v1.20.0 was used to analyze differential gene expression. Transcripts with adjusted p-value < 0.05 were considered differentialled expressed.	WBPaper00048971:daf-16(mgDf50)_downregulated_L1
	Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014.	N.A.	WBPaper00026929:sir-2.1_overexpression_regulated
	Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
	Single-cell RNA-Seq cell group 30_3 expressed in gland.	scVI 0.6.0	WBPaper00065841:30_3
	Genome-wide analysis of developmental and sex-regulated gene expression profile.	self-organizing map	cgc4489_group_16

1 Expression Patterns

• Primary Identifier: Expr2113
• Remark: Other strain-- UL190
• Pattern: Expression is seen in a number of cells in the body of adult worms.

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00023224
• Start: 7105441
• End: 7106460
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 1020

1 Sequence Ontology Term