WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54F2.2a.3 Sequence Name  F54F2.2a.3
Length (nt)  4764   Chromosome Location  III: 8791545-8806289
Chromosome . Primary Identifier  III Chromosome Location . Start  8791545
Chromosome Location . End  8806289 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54F2.2a.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006975 zfp-1 F54F2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54F2.2a F54F2.2a 2604   III: 8798555-8798663

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54F2.2a.3 8791545 8806289 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon98862   117   III: 8791545-8791661 Caenorhabditis elegans
Exon98867   839   III: 8792109-8792947 Caenorhabditis elegans
Exon98871   178   III: 8792997-8793174 Caenorhabditis elegans
Exon98877   73   III: 8793217-8793289 Caenorhabditis elegans
Exon98882   89   III: 8793339-8793427 Caenorhabditis elegans
Exon98889   111   III: 8794033-8794143 Caenorhabditis elegans
Exon98899   67   III: 8798398-8798464 Caenorhabditis elegans
Exon98908   131   III: 8798533-8798663 Caenorhabditis elegans
Exon98916   256   III: 8798859-8799114 Caenorhabditis elegans
Exon98924   91   III: 8799395-8799485 Caenorhabditis elegans
Exon98933   111   III: 8799535-8799645 Caenorhabditis elegans
Exon98943   597   III: 8802825-8803421 Caenorhabditis elegans
Exon98952   544   III: 8803567-8804110 Caenorhabditis elegans
Exon98962   589   III: 8804284-8804872 Caenorhabditis elegans
Exon98972   133   III: 8804921-8805053 Caenorhabditis elegans
Exon98984   838   III: 8805452-8806289 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54F2.2a.3 8791545 8806289 1

1 Sequence

Length
4764

1 Sequence Ontology Term

Identifier Name Description
transcript