WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54F2.2a.7 Sequence Name  F54F2.2a.7
Length (nt)  3773   Chromosome Location  III: 8794409-8806289
Chromosome . Primary Identifier  III Chromosome Location . Start  8794409
Chromosome Location . End  8806289 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54F2.2a.7

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006975 zfp-1 F54F2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54F2.2a F54F2.2a 2604   III: 8798555-8798663

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54F2.2a.7 8794409 8806289 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon98895   416   III: 8794409-8794824 Caenorhabditis elegans
Exon98903   67   III: 8798398-8798464 Caenorhabditis elegans
Exon98912   131   III: 8798533-8798663 Caenorhabditis elegans
Exon98920   256   III: 8798859-8799114 Caenorhabditis elegans
Exon98928   91   III: 8799395-8799485 Caenorhabditis elegans
Exon98937   111   III: 8799535-8799645 Caenorhabditis elegans
Exon98947   597   III: 8802825-8803421 Caenorhabditis elegans
Exon98956   544   III: 8803567-8804110 Caenorhabditis elegans
Exon98966   589   III: 8804284-8804872 Caenorhabditis elegans
Exon98976   133   III: 8804921-8805053 Caenorhabditis elegans
Exon98988   838   III: 8805452-8806289 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54F2.2a.7 8794409 8806289 1

1 Sequence

Length
3773

1 Sequence Ontology Term

Identifier Name Description
transcript