WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M01A8.2a.1 Sequence Name  M01A8.2a.1
Length (nt)  3201   Chromosome Location  III: 9260175-9269062
Chromosome . Primary Identifier  III Chromosome Location . Start  9260175
Chromosome Location . End  9269062 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M01A8.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010796 clip-1 M01A8.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M01A8.2a M01A8.2a 2814   III: 9260542-9260774

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:M01A8.2a.1 9260175 9269062 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon100020   600   III: 9260175-9260774 Caenorhabditis elegans
Exon100022   104   III: 9260827-9260930 Caenorhabditis elegans
Exon100024   171   III: 9261059-9261229 Caenorhabditis elegans
Exon100026   110   III: 9261286-9261395 Caenorhabditis elegans
Exon100028   300   III: 9261445-9261744 Caenorhabditis elegans
Exon100030   56   III: 9262129-9262184 Caenorhabditis elegans
Exon100033   102   III: 9262834-9262935 Caenorhabditis elegans
Exon100035   123   III: 9262987-9263109 Caenorhabditis elegans
Exon100037   222   III: 9263564-9263785 Caenorhabditis elegans
Exon100039   147   III: 9263845-9263991 Caenorhabditis elegans
Exon100041   106   III: 9264185-9264290 Caenorhabditis elegans
Exon100043   144   III: 9264864-9265007 Caenorhabditis elegans
Exon100046   113   III: 9265458-9265570 Caenorhabditis elegans
Exon100048   204   III: 9265616-9265819 Caenorhabditis elegans
Exon100050   94   III: 9265981-9266074 Caenorhabditis elegans
Exon100052   75   III: 9266124-9266198 Caenorhabditis elegans
Exon100054   204   III: 9267416-9267619 Caenorhabditis elegans
Exon100055   110   III: 9267824-9267933 Caenorhabditis elegans
Exon100057   172   III: 9267976-9268147 Caenorhabditis elegans
Exon100059   44   III: 9269019-9269062 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:M01A8.2a.1 9260175 9269062 -1

1 Sequence

Length
3201

1 Sequence Ontology Term

Identifier Name Description
transcript