WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39A1A.23b.1 Sequence Name  Y39A1A.23b.1
Length (nt)  1494   Chromosome Location  III: 10621629-10626234
Chromosome . Primary Identifier  III Chromosome Location . Start  10621629
Chromosome Location . End  10626234 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A1A.23b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001997 hpr-9 Y39A1A.23 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39A1A.23b Y39A1A.23b 1494   III: 10621629-10621668

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39A1A.23b.1 10621629 10626234 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon103696   40   III: 10621629-10621668 Caenorhabditis elegans
Exon103698   71   III: 10621718-10621788 Caenorhabditis elegans
Exon103700   126   III: 10621842-10621967 Caenorhabditis elegans
Exon103702   115   III: 10622016-10622130 Caenorhabditis elegans
Exon103704   106   III: 10622179-10622284 Caenorhabditis elegans
Exon103706   406   III: 10623218-10623623 Caenorhabditis elegans
Exon103708   56   III: 10624420-10624475 Caenorhabditis elegans
Exon103710   183   III: 10624529-10624711 Caenorhabditis elegans
Exon103714   72   III: 10624872-10624943 Caenorhabditis elegans
Exon103716   208   III: 10625379-10625586 Caenorhabditis elegans
Exon103720   100   III: 10626048-10626147 Caenorhabditis elegans
Exon103722   11   III: 10626224-10626234 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39A1A.23b.1 10621629 10626234 1

1 Sequence

Length
1494

1 Sequence Ontology Term

Identifier Name Description
transcript