WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39A1A.15b.1 Sequence Name  Y39A1A.15b.1
Length (nt)  3330   Chromosome Location  III: 10655018-10677522
Chromosome . Primary Identifier  III Chromosome Location . Start  10655018
Chromosome Location . End  10677522 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A1A.15b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000566 cnt-2 Y39A1A.15 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39A1A.15b Y39A1A.15b 2856   III: 10655779-10655880

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39A1A.15b.1 10655018 10677522 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon103787   102   III: 10655018-10655119 Caenorhabditis elegans
Exon103789   106   III: 10655775-10655880 Caenorhabditis elegans
Exon103792   82   III: 10656892-10656973 Caenorhabditis elegans
Exon103799   59   III: 10664474-10664532 Caenorhabditis elegans
Exon103807   88   III: 10667690-10667777 Caenorhabditis elegans
Exon103814   230   III: 10667830-10668059 Caenorhabditis elegans
Exon103822   136   III: 10669205-10669340 Caenorhabditis elegans
Exon103831   593   III: 10672848-10673440 Caenorhabditis elegans
Exon103839   125   III: 10673895-10674019 Caenorhabditis elegans
Exon103848   1123   III: 10674509-10675631 Caenorhabditis elegans
Exon103857   162   III: 10676454-10676615 Caenorhabditis elegans
Exon103869   524   III: 10676999-10677522 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39A1A.15b.1 10655018 10677522 1

1 Sequence

Length
3330

1 Sequence Ontology Term

Identifier Name Description
transcript