WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39A1A.15a.1 Sequence Name  Y39A1A.15a.1
Length (nt)  3742   Chromosome Location  III: 10663609-10677520
Chromosome . Primary Identifier  III Chromosome Location . Start  10663609
Chromosome Location . End  10677520 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A1A.15a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000566 cnt-2 Y39A1A.15 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39A1A.15a Y39A1A.15a 3324   III: 10663661-10664312

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39A1A.15a.1 10663609 10677520 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon103796   704   III: 10663609-10664312 Caenorhabditis elegans
Exon103798   59   III: 10664474-10664532 Caenorhabditis elegans
Exon103806   88   III: 10667690-10667777 Caenorhabditis elegans
Exon103813   230   III: 10667830-10668059 Caenorhabditis elegans
Exon103821   136   III: 10669205-10669340 Caenorhabditis elegans
Exon103830   593   III: 10672848-10673440 Caenorhabditis elegans
Exon103838   125   III: 10673895-10674019 Caenorhabditis elegans
Exon103847   1123   III: 10674509-10675631 Caenorhabditis elegans
Exon103856   162   III: 10676454-10676615 Caenorhabditis elegans
Exon103868   522   III: 10676999-10677520 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39A1A.15a.1 10663609 10677520 1

1 Sequence

Length
3742

1 Sequence Ontology Term

Identifier Name Description
transcript