WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y47D3A.17b.2 Sequence Name  Y47D3A.17b.2
Length (nt)  2754   Chromosome Location  III: 11257304-11267715
Chromosome . Primary Identifier  III Chromosome Location . Start  11257304
Chromosome Location . End  11267715 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47D3A.17b.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012930 obr-1 Y47D3A.17 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47D3A.17b Y47D3A.17b 1884   III: 11257505-11257647

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3A.17b.2 11257304 11267715 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon105202   344   III: 11257304-11257647 Caenorhabditis elegans
Exon105210   98   III: 11258079-11258176 Caenorhabditis elegans
Exon105218   123   III: 11258228-11258350 Caenorhabditis elegans
Exon105226   173   III: 11258396-11258568 Caenorhabditis elegans
Exon105234   318   III: 11258913-11259230 Caenorhabditis elegans
Exon105242   156   III: 11259881-11260036 Caenorhabditis elegans
Exon105250   111   III: 11260133-11260243 Caenorhabditis elegans
Exon105259   229   III: 11260840-11261068 Caenorhabditis elegans
Exon105266   137   III: 11263368-11263504 Caenorhabditis elegans
Exon105273   117   III: 11264366-11264482 Caenorhabditis elegans
Exon105280   89   III: 11265291-11265379 Caenorhabditis elegans
Exon105287   120   III: 11265434-11265553 Caenorhabditis elegans
Exon105294   133   III: 11266214-11266346 Caenorhabditis elegans
Exon105301   73   III: 11266944-11267016 Caenorhabditis elegans
Exon105306   533   III: 11267183-11267715 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3A.17b.2 11257304 11267715 -1

1 Sequence

Length
2754

1 Sequence Ontology Term

Identifier Name Description
transcript