WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

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mRNA :

WormMine ID  Transcript:Y47D3A.17b.4 Sequence Name  Y47D3A.17b.4
Length (nt)  1949   Chromosome Location  III: 11257505-11266348
Chromosome . Primary Identifier  III Chromosome Location . Start  11257505
Chromosome Location . End  11266348 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47D3A.17b.4

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012930 obr-1 Y47D3A.17 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47D3A.17b Y47D3A.17b 1884   III: 11257505-11257647

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3A.17b.4 11257505 11266348 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon105205   143   III: 11257505-11257647 Caenorhabditis elegans
Exon105212   98   III: 11258079-11258176 Caenorhabditis elegans
Exon105220   123   III: 11258228-11258350 Caenorhabditis elegans
Exon105228   173   III: 11258396-11258568 Caenorhabditis elegans
Exon105236   318   III: 11258913-11259230 Caenorhabditis elegans
Exon105244   156   III: 11259881-11260036 Caenorhabditis elegans
Exon105252   111   III: 11260133-11260243 Caenorhabditis elegans
Exon105261   229   III: 11260840-11261068 Caenorhabditis elegans
Exon105268   137   III: 11263368-11263504 Caenorhabditis elegans
Exon105275   117   III: 11264366-11264482 Caenorhabditis elegans
Exon105282   89   III: 11265291-11265379 Caenorhabditis elegans
Exon105289   120   III: 11265434-11265553 Caenorhabditis elegans
Exon105298   135   III: 11266214-11266348 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3A.17b.4 11257505 11266348 -1

1 Sequence

Length
1949

1 Sequence Ontology Term

Identifier Name Description
transcript