WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

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CDS :

WormMine ID  CDS:Y47D3A.17c Sequence Name  Y47D3A.17c
Length (nt)  2529   Chromosome Location  III: 11257505-11257647
Chromosome . Primary Identifier  III Chromosome Location . Start  11257505
Chromosome Location . End  11257647
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47D3A.17c

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE41471 OBR-1, isoform c 95.2 842 Caenorhabditis elegans
 

Other

10 RNAi

WormBase ID
WBRNAi00056739
WBRNAi00056737
WBRNAi00056738
WBRNAi00020699
WBRNAi00020700
WBRNAi00037156
WBRNAi00001053
WBRNAi00088641
WBRNAi00091935
WBRNAi00088748

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y47D3A.17c 11257505 11257647 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012930 obr-1 Y47D3A.17 Caenorhabditis elegans

15 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y47D3A.17c 11257505 11257647 -1
CDS:Y47D3A.17c 11258079 11258176 -1
CDS:Y47D3A.17c 11258228 11258350 -1
CDS:Y47D3A.17c 11258396 11258568 -1
CDS:Y47D3A.17c 11258913 11259230 -1
CDS:Y47D3A.17c 11259881 11260036 -1
CDS:Y47D3A.17c 11260133 11260243 -1
CDS:Y47D3A.17c 11260840 11261068 -1
CDS:Y47D3A.17c 11263368 11263504 -1
CDS:Y47D3A.17c 11264366 11264482 -1
CDS:Y47D3A.17c 11265291 11265379 -1
CDS:Y47D3A.17c 11265434 11265553 -1
CDS:Y47D3A.17c 11266214 11266346 -1
CDS:Y47D3A.17c 11266944 11267016 -1
CDS:Y47D3A.17c 11267183 11267691 -1

1 Sequence

Length
2529

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y47D3A.17c.1 Y47D3A.17c.1 2529   III: 11257505-11267691