WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y47D3A.17e.1 Sequence Name  Y47D3A.17e.1
Length (nt)  2199   Chromosome Location  III: 11257505-11270747
Chromosome . Primary Identifier  III Chromosome Location . Start  11257505
Chromosome Location . End  11270747 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47D3A.17e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012930 obr-1 Y47D3A.17 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47D3A.17e Y47D3A.17e 2199   III: 11257505-11257647

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3A.17e.1 11257505 11270747 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon105207   143   III: 11257505-11257647 Caenorhabditis elegans
Exon105215   98   III: 11258079-11258176 Caenorhabditis elegans
Exon105223   123   III: 11258228-11258350 Caenorhabditis elegans
Exon105231   173   III: 11258396-11258568 Caenorhabditis elegans
Exon105239   318   III: 11258913-11259230 Caenorhabditis elegans
Exon105247   156   III: 11259881-11260036 Caenorhabditis elegans
Exon105255   111   III: 11260133-11260243 Caenorhabditis elegans
Exon105263   229   III: 11260840-11261068 Caenorhabditis elegans
Exon105270   137   III: 11263368-11263504 Caenorhabditis elegans
Exon105277   117   III: 11264366-11264482 Caenorhabditis elegans
Exon105284   89   III: 11265291-11265379 Caenorhabditis elegans
Exon105291   120   III: 11265434-11265553 Caenorhabditis elegans
Exon105297   133   III: 11266214-11266346 Caenorhabditis elegans
Exon105303   73   III: 11266944-11267016 Caenorhabditis elegans
Exon105309   105   III: 11269917-11270021 Caenorhabditis elegans
Exon105311   74   III: 11270674-11270747 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y47D3A.17e.1 11257505 11270747 -1

1 Sequence

Length
2199

1 Sequence Ontology Term

Identifier Name Description
transcript