WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y111B2A.22b.1 Sequence Name  Y111B2A.22b.1
Length (nt)  5649   Chromosome Location  III: 12714588-12728642
Chromosome . Primary Identifier  III Chromosome Location . Start  12714588
Chromosome Location . End  12728642 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y111B2A.22b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007027 ssl-1 Y111B2A.22 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y111B2A.22b Y111B2A.22b 5649   III: 12714588-12714868

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.22b.1 12714588 12728642 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon107837   281   III: 12714588-12714868 Caenorhabditis elegans
Exon107839   105   III: 12715510-12715614 Caenorhabditis elegans
Exon107841   229   III: 12715671-12715899 Caenorhabditis elegans
Exon107844   786   III: 12718007-12718792 Caenorhabditis elegans
Exon107847   633   III: 12719442-12720074 Caenorhabditis elegans
Exon107850   831   III: 12721272-12722102 Caenorhabditis elegans
Exon107853   485   III: 12723287-12723771 Caenorhabditis elegans
Exon107856   955   III: 12725798-12726752 Caenorhabditis elegans
Exon107859   84   III: 12727230-12727313 Caenorhabditis elegans
Exon107863   1260   III: 12727383-12728642 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.22b.1 12714588 12728642 1

1 Sequence

Length
5649

1 Sequence Ontology Term

Identifier Name Description
transcript