WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y111B2A.22d.1 Sequence Name  Y111B2A.22d.1
Length (nt)  6750   Chromosome Location  III: 12715723-12743929
Chromosome . Primary Identifier  III Chromosome Location . Start  12715723
Chromosome Location . End  12743929 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y111B2A.22d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007027 ssl-1 Y111B2A.22 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y111B2A.22d Y111B2A.22d 6750   III: 12715723-12715899

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.22d.1 12715723 12743929 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon107842   177   III: 12715723-12715899 Caenorhabditis elegans
Exon107845   786   III: 12718007-12718792 Caenorhabditis elegans
Exon107848   633   III: 12719442-12720074 Caenorhabditis elegans
Exon107851   831   III: 12721272-12722102 Caenorhabditis elegans
Exon107854   485   III: 12723287-12723771 Caenorhabditis elegans
Exon107857   955   III: 12725798-12726752 Caenorhabditis elegans
Exon107860   84   III: 12727230-12727313 Caenorhabditis elegans
Exon107862   144   III: 12727383-12727526 Caenorhabditis elegans
Exon107867   223   III: 12732466-12732688 Caenorhabditis elegans
Exon107871   287   III: 12734036-12734322 Caenorhabditis elegans
Exon107874   511   III: 12735248-12735758 Caenorhabditis elegans
Exon107877   735   III: 12737671-12738405 Caenorhabditis elegans
Exon107880   248   III: 12739984-12740231 Caenorhabditis elegans
Exon107883   227   III: 12741823-12742049 Caenorhabditis elegans
Exon107885   424   III: 12743506-12743929 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y111B2A.22d.1 12715723 12743929 1

1 Sequence

Length
6750

1 Sequence Ontology Term

Identifier Name Description
transcript