WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05D4.4a.1 Sequence Name  T05D4.4a.1
Length (nt)  2101   Chromosome Location  III: 13576182-13580662
Chromosome . Primary Identifier  III Chromosome Location . Start  13576182
Chromosome Location . End  13580662 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05D4.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003887 osm-7 T05D4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05D4.4a T05D4.4a 1956   III: 13576204-13576458

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T05D4.4a.1 13576182 13580662 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon109400   277   III: 13576182-13576458 Caenorhabditis elegans
Exon109402   173   III: 13577007-13577179 Caenorhabditis elegans
Exon109404   172   III: 13577393-13577564 Caenorhabditis elegans
Exon109406   140   III: 13577683-13577822 Caenorhabditis elegans
Exon109408   89   III: 13577978-13578066 Caenorhabditis elegans
Exon109410   112   III: 13578172-13578283 Caenorhabditis elegans
Exon109412   51   III: 13578344-13578394 Caenorhabditis elegans
Exon109414   213   III: 13578445-13578657 Caenorhabditis elegans
Exon109416   167   III: 13578991-13579157 Caenorhabditis elegans
Exon109418   108   III: 13579517-13579624 Caenorhabditis elegans
Exon109419   103   III: 13579670-13579772 Caenorhabditis elegans
Exon109421   496   III: 13580167-13580662 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T05D4.4a.1 13576182 13580662 1

1 Sequence

Length
2101

1 Sequence Ontology Term

Identifier Name Description
transcript