WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K08E3.3a.1 Sequence Name  K08E3.3a.1
Length (nt)  2027   Chromosome Location  III: 13755896-13759445
Chromosome . Primary Identifier  III Chromosome Location . Start  13755896
Chromosome Location . End  13759445 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K08E3.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010663 toca-2 K08E3.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K08E3.3a K08E3.3a 1827   III: 13755999-13756031

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K08E3.3a.1 13755896 13759445 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon109735   136   III: 13755896-13756031 Caenorhabditis elegans
Exon109737   116   III: 13756074-13756189 Caenorhabditis elegans
Exon109739   124   III: 13756239-13756362 Caenorhabditis elegans
Exon109741   161   III: 13756411-13756571 Caenorhabditis elegans
Exon109743   106   III: 13756619-13756724 Caenorhabditis elegans
Exon109745   205   III: 13756772-13756976 Caenorhabditis elegans
Exon109747   82   III: 13757022-13757103 Caenorhabditis elegans
Exon109749   77   III: 13757150-13757226 Caenorhabditis elegans
Exon109751   250   III: 13757373-13757622 Caenorhabditis elegans
Exon109753   152   III: 13757918-13758069 Caenorhabditis elegans
Exon109755   107   III: 13758204-13758310 Caenorhabditis elegans
Exon109757   51   III: 13758359-13758409 Caenorhabditis elegans
Exon109759   130   III: 13758854-13758983 Caenorhabditis elegans
Exon109761   175   III: 13759067-13759241 Caenorhabditis elegans
Exon109764   155   III: 13759291-13759445 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K08E3.3a.1 13755896 13759445 1

1 Sequence

Length
2027

1 Sequence Ontology Term

Identifier Name Description
transcript