WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55F3C.3e.1 Sequence Name  Y55F3C.3e.1
Length (nt)  1590   Chromosome Location  IV: 748707-752928
Chromosome . Primary Identifier  IV Chromosome Location . Start  748707
Chromosome Location . End  752928 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55F3C.3e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021948 kvs-5 Y55F3C.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55F3C.3e Y55F3C.3e 1590   IV: 748707-748738

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y55F3C.3e.1 748707 752928 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon112180   32   IV: 748707-748738 Caenorhabditis elegans
Exon112186   102   IV: 748813-748914 Caenorhabditis elegans
Exon112192   170   IV: 748969-749138 Caenorhabditis elegans
Exon112198   94   IV: 749514-749607 Caenorhabditis elegans
Exon112204   181   IV: 749791-749971 Caenorhabditis elegans
Exon112213   93   IV: 750200-750292 Caenorhabditis elegans
Exon112219   201   IV: 751088-751288 Caenorhabditis elegans
Exon112225   54   IV: 751381-751434 Caenorhabditis elegans
Exon112229   102   IV: 751583-751684 Caenorhabditis elegans
Exon112235   193   IV: 751872-752064 Caenorhabditis elegans
Exon112241   163   IV: 752115-752277 Caenorhabditis elegans
Exon112247   127   IV: 752679-752805 Caenorhabditis elegans
Exon112252   78   IV: 752851-752928 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y55F3C.3e.1 748707 752928 1

1 Sequence

Length
1590

1 Sequence Ontology Term

Identifier Name Description
transcript