WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F53H1.1c.1 Sequence Name  F53H1.1c.1
Length (nt)  2502   Chromosome Location  IV: 1297400-1309644
Chromosome . Primary Identifier  IV Chromosome Location . Start  1297400
Chromosome Location . End  1309644 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53H1.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018776 ddx-46 F53H1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53H1.1c F53H1.1c 2502   IV: 1297400-1297447

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F53H1.1c.1 1297400 1309644 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon113218   48   IV: 1297400-1297447 Caenorhabditis elegans
Exon113221   299   IV: 1297586-1297884 Caenorhabditis elegans
Exon113225   370   IV: 1298985-1299354 Caenorhabditis elegans
Exon113228   218   IV: 1300556-1300773 Caenorhabditis elegans
Exon113232   160   IV: 1301935-1302094 Caenorhabditis elegans
Exon113236   276   IV: 1303064-1303339 Caenorhabditis elegans
Exon113240   120   IV: 1303411-1303530 Caenorhabditis elegans
Exon113244   201   IV: 1304386-1304586 Caenorhabditis elegans
Exon113250   554   IV: 1307909-1308462 Caenorhabditis elegans
Exon113253   256   IV: 1309389-1309644 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F53H1.1c.1 1297400 1309644 -1

1 Sequence

Length
2502

1 Sequence Ontology Term

Identifier Name Description
transcript