WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y77E11A.13a Sequence Name  Y77E11A.13a
Length (nt)  942   Chromosome Location  IV: 1490838-1490948
Chromosome . Primary Identifier  IV Chromosome Location . Start  1490838
Chromosome Location . End  1490948
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y77E11A.13a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE25614 NPP-20, isoform a 34.7 313 Caenorhabditis elegans
 

Other

17 RNAi

WormBase ID
WBRNAi00009428
WBRNAi00026965
WBRNAi00092402
WBRNAi00085846
WBRNAi00078425
WBRNAi00071707
WBRNAi00071399
WBRNAi00071398
WBRNAi00110590
WBRNAi00110042
WBRNAi00110012
WBRNAi00037872
WBRNAi00058510
WBRNAi00110022
WBRNAi00080622
WBRNAi00110944
WBRNAi00110032

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y77E11A.13a 1490838 1490948 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003806 npp-20 Y77E11A.13 Caenorhabditis elegans

6 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y77E11A.13a 1490838 1490948 -1
CDS:Y77E11A.13a 1492044 1492314 -1
CDS:Y77E11A.13a 1494630 1494944 -1
CDS:Y77E11A.13a 1495605 1495726 -1
CDS:Y77E11A.13a 1495816 1495890 -1
CDS:Y77E11A.13a 1495960 1496007 -1

1 Sequence

Length
942

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y77E11A.13a.1 Y77E11A.13a.1 1142   IV: 1490653-1496022