WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219752 Gene Name  anr-50
Sequence Name  ? Y41D4B.32 Organism  Caenorhabditis elegans
Automated Description  Is affected by dpy-21 and ogt-1 based on RNA-seq studies. Biotype  SO:0002182
Genetic Position  IV :-16.2879± Length (nt)  ? 209
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219752

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y41D4B.32 Y41D4B.32 209   IV: 1629779-1629987
 

Other

0 CDSs

1 RNAi Result

WormBase ID
WBRNAi00056395

7 Allele

Public Name
gk963722
gk964482
gk963025
WBVar00184216
WBVar01648356
WBVar01687442
gk364370

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00219752 1629779 1629987 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in dpy-21(e428) comparing to in N2 during L3 stage. DESeq v1.6.3. Fold change > 1.5. WBPaper00050370:dpy-21(e428)_L3_upregulated
  Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_downregulated_neuron

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00219752 1629779 1629987 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
209

1 Sequence Ontology Term