WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y38F2AR.7.1 Sequence Name  Y38F2AR.7.1
Length (nt)  2376   Chromosome Location  IV: 2333837-2348912
Chromosome . Primary Identifier  IV Chromosome Location . Start  2333837
Chromosome Location . End  2348912 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y38F2AR.7.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021425 ppgn-1 Y38F2AR.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y38F2AR.7 Y38F2AR.7 2244   IV: 2333968-2334099

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y38F2AR.7.1 2333837 2348912 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon114851   263   IV: 2333837-2334099 Caenorhabditis elegans
Exon114853   390   IV: 2334696-2335085 Caenorhabditis elegans
Exon114855   270   IV: 2338183-2338452 Caenorhabditis elegans
Exon114857   239   IV: 2339715-2339953 Caenorhabditis elegans
Exon114859   280   IV: 2342529-2342808 Caenorhabditis elegans
Exon114861   259   IV: 2345055-2345313 Caenorhabditis elegans
Exon114863   141   IV: 2347484-2347624 Caenorhabditis elegans
Exon114865   361   IV: 2348204-2348564 Caenorhabditis elegans
Exon114867   63   IV: 2348691-2348753 Caenorhabditis elegans
Exon114869   110   IV: 2348803-2348912 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y38F2AR.7.1 2333837 2348912 -1

1 Sequence

Length
2376

1 Sequence Ontology Term

Identifier Name Description
transcript