WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F28F9.4.1 Sequence Name  F28F9.4.1
Length (nt)  1562   Chromosome Location  IV: 3862033-3865044
Chromosome . Primary Identifier  IV Chromosome Location . Start  3862033
Chromosome Location . End  3865044 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F28F9.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000009 aat-8 F28F9.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F28F9.4 F28F9.4 1452   IV: 3862129-3862205

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F28F9.4.1 3862033 3865044 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon117840   173   IV: 3862033-3862205 Caenorhabditis elegans
Exon117841   60   IV: 3862262-3862321 Caenorhabditis elegans
Exon117842   271   IV: 3862367-3862637 Caenorhabditis elegans
Exon117844   97   IV: 3862876-3862972 Caenorhabditis elegans
Exon117845   107   IV: 3863188-3863294 Caenorhabditis elegans
Exon117846   124   IV: 3863342-3863465 Caenorhabditis elegans
Exon117847   289   IV: 3863981-3864269 Caenorhabditis elegans
Exon117848   247   IV: 3864348-3864594 Caenorhabditis elegans
Exon117849   84   IV: 3864808-3864891 Caenorhabditis elegans
Exon117850   110   IV: 3864935-3865044 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F28F9.4.1 3862033 3865044 -1

1 Sequence

Length
1562

1 Sequence Ontology Term

Identifier Name Description
transcript