WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00195370 Gene Name  F29B9.13
Sequence Name  ? F29B9.13 Organism  Caenorhabditis elegans
Automated Description  Enriched in neurons based on RNA-seq studies. Is affected by etr-1 and glp-1 based on RNA-seq studies. Is affected by cholesterol based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 121
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00195370

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F29B9.13 F29B9.13 121   IV: 4669216-4669336
 

Other

0 CDSs

0 RNAi Result

4 Allele

Public Name
gk964500
gk963722
gk963908
gk427026

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00195370 4669216 4669336 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_4669337..4669541   205 IV: 4669337-4669541 Caenorhabditis elegans

6 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched
  Transcripts that showed significantly decreased expression in mitosis germline cells comparing to in meiosis germline cells. Log2 Fold change > 2 or <-1, p-value < 0.05. WBPaper00053599:mitosis_vs_meiosis_downregulated
  Transcripts that showed significantly decreased expression glp-1(e2141); TU3401 animals comparing to in TU3401 animals. Fold change > 2, FDR < 0.01. WBPaper00065993:glp-1(e2141)_downregulated
  Transcripts of noncoding genes that showed significantly increased expression in muscle. DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed. WBPaper00062325:muscle_enriched_noncoding-RNA
  Transcripts that showed significantly decreased expression when grown with 20ug per ml cholesterol supplementation, comparing to animals grown with 5ug per ml supplementation. DESeq2 WBPaper00059728:20ug_cholesterol_downregulated
  Transcripts that showed significantly decreased expression when grown with 5ug per ml cholesterol supplementation, comparing to animals grown with no cholesterol supplementation. DESeq2 WBPaper00059728:5ug_cholesterol_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00195370 4669216 4669336 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
121

1 Sequence Ontology Term