WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00235376 Gene Name  Y9C9A.112
Sequence Name  ? Y9C9A.112 Organism  Caenorhabditis elegans
Automated Description  Is affected by etr-1 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  Length (nt)  ? 9122
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00235376

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

51 Allele

Public Name
otn9990
otn9991
gk964500
gk963722
otn8725
otn8726
otn8727
gk963867
gk963150
otn12270
otn12269
otn11275
otn11277
otn11276
gk963978
gk964027
gk963614
WBVar02123595
otn604
otn13233
gk201084
WBVar01727590
tm11969
WBVar01452329
WBVar01452330
otn6613
gk735874
otn5217
gk753106
otn5218

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00235376 4920355 4929476 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_4929477..4929766   290 IV: 4929477-4929766 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells. DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction. WBPaper00060811:L1_vs_adult_upregulated_neural
  Transcripts of noncoding genes that showed significantly decreased expression in muscle. DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed. WBPaper00062325:muscle_depleted_noncoding-RNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00235376 4920355 4929476 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
9122

1 Sequence Ontology Term