WormMine: Gene WBGene00048457

• WormBase Gene ID: WBGene00048457
• Gene Name: 21ur-1406
• Sequence Name: C09B9.17
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in neurons based on RNA-seq studies.
• Biotype: SO:0001638
• Genetic Position: IV :1.42615±
• Length (nt): 21

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00048457

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:C09B9.17	C09B9.17	21	IV: 5049629-5049649

Other

0 CDSs

0 RNAi Result

4 Allele

• gk964500
• gk963722
• gk963867
• gk963150

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00048457
• Start: 5049629
• End: 5049649
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIV_5049596..5049628
• Length (nt): 33
• Chromosome Location: IV: 5049596-5049628
• Organism: Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology.	DESEQ2, fold change > 2 and FDR < 0.01.	WBPaper00062103:neuron_enriched
	piRNAs that showed significantly lower expression (log2fold > 2, padj < 0.01) in hermaphrodite gonad (somatic gonad plus germine) than in male gonad (somatic gonad plus germine).	DESeq2 v1.13.8, fold change > 2, FDR < 0.01.	WBPaper00056161:male_enriched_piRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00048457
• Start: 5049629
• End: 5049649
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 21

1 Sequence Ontology Term