WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:B0478.1b Sequence Name  B0478.1b
Length (nt)  1119   Chromosome Location  IV: 6960844-6960885
Chromosome . Primary Identifier  IV Chromosome Location . Start  6960844
Chromosome Location . End  6960885
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0478.1b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE30123 JNK-1, isoform b 43.2 372 Caenorhabditis elegans
 

Other

16 RNAi

WormBase ID
WBRNAi00113175
WBRNAi00039096
WBRNAi00078116
WBRNAi00109581
WBRNAi00028243
WBRNAi00109192
WBRNAi00113092
WBRNAi00113146
WBRNAi00087936
WBRNAi00109102
WBRNAi00109290
WBRNAi00112945
WBRNAi00062612
WBRNAi00109484
WBRNAi00095280
WBRNAi00109387

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:B0478.1b 6960844 6960885 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002178 jnk-1 B0478.1 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier
Start End Strand
CDS:B0478.1b 6960844 6960885 1
CDS:B0478.1b 6960933 6961018 1
CDS:B0478.1b 6961142 6961271 1
CDS:B0478.1b 6961321 6961518 1
CDS:B0478.1b 6961797 6961962 1
CDS:B0478.1b 6962123 6962221 1
CDS:B0478.1b 6962270 6962348 1
CDS:B0478.1b 6962406 6962482 1
CDS:B0478.1b 6962526 6962641 1
CDS:B0478.1b 6963467 6963592 1

1 Sequence

Length
1119

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:B0478.1b.1 B0478.1b.1 1473   IV: 6960209-6963719