WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y40C5A.2.1 Sequence Name  Y40C5A.2.1
Length (nt)  2390   Chromosome Location  IV: 7329611-7332795
Chromosome . Primary Identifier  IV Chromosome Location . Start  7329611
Chromosome Location . End  7332795 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y40C5A.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003841 ocr-4 Y40C5A.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y40C5A.2 Y40C5A.2 2271   IV: 7329679-7329852

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y40C5A.2.1 7329611 7332795 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon129868   242   IV: 7329611-7329852 Caenorhabditis elegans
Exon129869   246   IV: 7329900-7330145 Caenorhabditis elegans
Exon129870   280   IV: 7330220-7330499 Caenorhabditis elegans
Exon129871   260   IV: 7330552-7330811 Caenorhabditis elegans
Exon129873   166   IV: 7330853-7331018 Caenorhabditis elegans
Exon129874   236   IV: 7331264-7331499 Caenorhabditis elegans
Exon129875   102   IV: 7331546-7331647 Caenorhabditis elegans
Exon129876   154   IV: 7331690-7331843 Caenorhabditis elegans
Exon129877   482   IV: 7332051-7332532 Caenorhabditis elegans
Exon129878   222   IV: 7332574-7332795 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y40C5A.2.1 7329611 7332795 -1

1 Sequence

Length
2390

1 Sequence Ontology Term

Identifier Name Description
transcript