WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F33D4.2a.1 Sequence Name  F33D4.2a.1
Length (nt)  8906   Chromosome Location  IV: 7675174-7696930
Chromosome . Primary Identifier  IV Chromosome Location . Start  7675174
Chromosome Location . End  7696930 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F33D4.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002173 itr-1 F33D4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F33D4.2a F33D4.2a 8679   IV: 7675174-7675252

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F33D4.2a.1 7675174 7696930 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

33 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon131462   79   IV: 7675174-7675252 Caenorhabditis elegans
Exon131464   103   IV: 7677479-7677581 Caenorhabditis elegans
Exon131471   144   IV: 7681709-7681852 Caenorhabditis elegans
Exon131477   208   IV: 7681906-7682113 Caenorhabditis elegans
Exon131483   150   IV: 7682273-7682422 Caenorhabditis elegans
Exon131489   288   IV: 7682825-7683112 Caenorhabditis elegans
Exon131495   159   IV: 7683159-7683317 Caenorhabditis elegans
Exon131502   158   IV: 7685672-7685829 Caenorhabditis elegans
Exon131509   53   IV: 7686062-7686114 Caenorhabditis elegans
Exon131515   122   IV: 7686160-7686281 Caenorhabditis elegans
Exon131521   201   IV: 7686329-7686529 Caenorhabditis elegans
Exon131527   447   IV: 7686699-7687145 Caenorhabditis elegans
Exon131533   140   IV: 7687190-7687329 Caenorhabditis elegans
Exon131539   234   IV: 7687534-7687767 Caenorhabditis elegans
Exon131545   120   IV: 7687817-7687936 Caenorhabditis elegans
Exon131551   316   IV: 7687983-7688298 Caenorhabditis elegans
Exon131557   795   IV: 7688347-7689141 Caenorhabditis elegans
Exon131563   1351   IV: 7689192-7690542 Caenorhabditis elegans
Exon131569   122   IV: 7690615-7690736 Caenorhabditis elegans
Exon131577   102   IV: 7691379-7691480 Caenorhabditis elegans
Exon131583   264   IV: 7691552-7691815 Caenorhabditis elegans
Exon131589   115   IV: 7692131-7692245 Caenorhabditis elegans
Exon131594   176   IV: 7692298-7692473 Caenorhabditis elegans
Exon131599   142   IV: 7692521-7692662 Caenorhabditis elegans
Exon131605   27   IV: 7692937-7692963 Caenorhabditis elegans
Exon131609   169   IV: 7693381-7693549 Caenorhabditis elegans
Exon131614   647   IV: 7693593-7694239 Caenorhabditis elegans
Exon131619   272   IV: 7694285-7694556 Caenorhabditis elegans
Exon131624   316   IV: 7694922-7695237 Caenorhabditis elegans
Exon131629   188   IV: 7695289-7695476 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F33D4.2a.1 7675174 7696930 1

1 Sequence

Length
8906

1 Sequence Ontology Term

Identifier Name Description
transcript