WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F20D12.1a.1 Sequence Name  F20D12.1a.1
Length (nt)  3662   Chromosome Location  IV: 7957267-7962157
Chromosome . Primary Identifier  IV Chromosome Location . Start  7957267
Chromosome Location . End  7962157 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F20D12.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017641 csr-1 F20D12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F20D12.1a F20D12.1a 3093   IV: 7957580-7958054

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F20D12.1a.1 7957267 7962157 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon132463   69   IV: 7957267-7957335 Caenorhabditis elegans
Exon132465   481   IV: 7957574-7958054 Caenorhabditis elegans
Exon132467   160   IV: 7958599-7958758 Caenorhabditis elegans
Exon132470   154   IV: 7958800-7958953 Caenorhabditis elegans
Exon132473   212   IV: 7958997-7959208 Caenorhabditis elegans
Exon132476   152   IV: 7959253-7959404 Caenorhabditis elegans
Exon132479   386   IV: 7959452-7959837 Caenorhabditis elegans
Exon132482   722   IV: 7959883-7960604 Caenorhabditis elegans
Exon132485   100   IV: 7960649-7960748 Caenorhabditis elegans
Exon132488   357   IV: 7960793-7961149 Caenorhabditis elegans
Exon132491   189   IV: 7961200-7961388 Caenorhabditis elegans
Exon132494   89   IV: 7961432-7961520 Caenorhabditis elegans
Exon132498   591   IV: 7961567-7962157 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F20D12.1a.1 7957267 7962157 1

1 Sequence

Length
3662

1 Sequence Ontology Term

Identifier Name Description
transcript