WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F20D12.1a.2 Sequence Name  F20D12.1a.2
Length (nt)  3599   Chromosome Location  IV: 7957568-7962157
Chromosome . Primary Identifier  IV Chromosome Location . Start  7957568
Chromosome Location . End  7962157 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F20D12.1a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017641 csr-1 F20D12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F20D12.1a F20D12.1a 3093   IV: 7957580-7958054

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F20D12.1a.2 7957568 7962157 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon132464   487   IV: 7957568-7958054 Caenorhabditis elegans
Exon132468   160   IV: 7958599-7958758 Caenorhabditis elegans
Exon132471   154   IV: 7958800-7958953 Caenorhabditis elegans
Exon132474   212   IV: 7958997-7959208 Caenorhabditis elegans
Exon132477   152   IV: 7959253-7959404 Caenorhabditis elegans
Exon132480   386   IV: 7959452-7959837 Caenorhabditis elegans
Exon132483   722   IV: 7959883-7960604 Caenorhabditis elegans
Exon132486   100   IV: 7960649-7960748 Caenorhabditis elegans
Exon132489   357   IV: 7960793-7961149 Caenorhabditis elegans
Exon132492   189   IV: 7961200-7961388 Caenorhabditis elegans
Exon132495   89   IV: 7961432-7961520 Caenorhabditis elegans
Exon132499   591   IV: 7961567-7962157 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F20D12.1a.2 7957568 7962157 1

1 Sequence

Length
3599

1 Sequence Ontology Term

Identifier Name Description
transcript