WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W08D2.5b.1 Sequence Name  W08D2.5b.1
Length (nt)  2682   Chromosome Location  IV: 9817710-9821393
Chromosome . Primary Identifier  IV Chromosome Location . Start  9817710
Chromosome Location . End  9821393 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W08D2.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012341 catp-6 W08D2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W08D2.5b W08D2.5b 2682   IV: 9817710-9817842

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W08D2.5b.1 9817710 9821393 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon138714   133   IV: 9817710-9817842 Caenorhabditis elegans
Exon138717   180   IV: 9817898-9818077 Caenorhabditis elegans
Exon138720   179   IV: 9818121-9818299 Caenorhabditis elegans
Exon138723   387   IV: 9818779-9819165 Caenorhabditis elegans
Exon138726   212   IV: 9819212-9819423 Caenorhabditis elegans
Exon138729   388   IV: 9819468-9819855 Caenorhabditis elegans
Exon138732   163   IV: 9819903-9820065 Caenorhabditis elegans
Exon138735   194   IV: 9820110-9820303 Caenorhabditis elegans
Exon138738   331   IV: 9820350-9820680 Caenorhabditis elegans
Exon138741   221   IV: 9820729-9820949 Caenorhabditis elegans
Exon138744   104   IV: 9820996-9821099 Caenorhabditis elegans
Exon138747   142   IV: 9821157-9821298 Caenorhabditis elegans
Exon138749   48   IV: 9821346-9821393 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W08D2.5b.1 9817710 9821393 -1

1 Sequence

Length
2682

1 Sequence Ontology Term

Identifier Name Description
transcript