WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C47E12.5b Sequence Name  C47E12.5b
Length (nt)  3087   Chromosome Location  IV: 9989932-9990064
Chromosome . Primary Identifier  IV Chromosome Location . Start  9989932
Chromosome Location . End  9990064
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C47E12.5b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE39093 UBA-1, isoform b 114.9 1028 Caenorhabditis elegans
 

Other

31 RNAi

WormBase ID
WBRNAi00095530
WBRNAi00108331
WBRNAi00085396
WBRNAi00002215
WBRNAi00008530
WBRNAi00029912
WBRNAi00064997
WBRNAi00090968
WBRNAi00042678
WBRNAi00071449
WBRNAi00093597
WBRNAi00082810
WBRNAi00076223
WBRNAi00107613
WBRNAi00024846
WBRNAi00092158
WBRNAi00111912
WBRNAi00112024
WBRNAi00095907
WBRNAi00095984
WBRNAi00096059
WBRNAi00096136
WBRNAi00096213
WBRNAi00096290
WBRNAi00096384
WBRNAi00096467
WBRNAi00096550
WBRNAi00096649
WBRNAi00107612
WBRNAi00109115

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C47E12.5b 9989932 9990064 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006699 uba-1 C47E12.5 Caenorhabditis elegans

6 Locations


Feature . Primary Identifier
Start End Strand
CDS:C47E12.5b 9989932 9990064 -1
CDS:C47E12.5b 9990140 9990444 -1
CDS:C47E12.5b 9990501 9991682 -1
CDS:C47E12.5b 9991729 9992811 -1
CDS:C47E12.5b 9992859 9993162 -1
CDS:C47E12.5b 9993210 9993289 -1

1 Sequence

Length
3087

1 Sequence Ontology Term

Identifier Name Description
CDS  

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C47E12.5b.2 C47E12.5b.2 3622   IV: 9989671-9994945
Transcript:C47E12.5b.1 C47E12.5b.1 3406   IV: 9989673-9993349
Transcript:C47E12.5b.4 C47E12.5b.4 3324   IV: 9989932-9994905
Transcript:C47E12.5b.3 C47E12.5b.3 3364   IV: 9989932-9994945