WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C48D1.3.1 Sequence Name  C48D1.3.1
Length (nt)  1967   Chromosome Location  IV: 13209730-13214566
Chromosome . Primary Identifier  IV Chromosome Location . Start  13209730
Chromosome Location . End  13214566 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C48D1.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000501 cho-1 C48D1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C48D1.3 C48D1.3 1731   IV: 13209959-13210069

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C48D1.3.1 13209730 13214566 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon149777   340   IV: 13209730-13210069 Caenorhabditis elegans
Exon149778   150   IV: 13211391-13211540 Caenorhabditis elegans
Exon149779   458   IV: 13211928-13212385 Caenorhabditis elegans
Exon149780   327   IV: 13212496-13212822 Caenorhabditis elegans
Exon149781   85   IV: 13213141-13213225 Caenorhabditis elegans
Exon149782   149   IV: 13213276-13213424 Caenorhabditis elegans
Exon149783   91   IV: 13213732-13213822 Caenorhabditis elegans
Exon149784   116   IV: 13213980-13214095 Caenorhabditis elegans
Exon149785   251   IV: 13214316-13214566 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C48D1.3.1 13209730 13214566 -1

1 Sequence

Length
1967

1 Sequence Ontology Term

Identifier Name Description
transcript