WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y45F10A.6f.1 Sequence Name  Y45F10A.6f.1
Length (nt)  3171   Chromosome Location  IV: 13477112-13499084
Chromosome . Primary Identifier  IV Chromosome Location . Start  13477112
Chromosome Location . End  13499084 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y45F10A.6f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012868 tbc-9 Y45F10A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y45F10A.6f Y45F10A.6f 3171   IV: 13477112-13477151

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y45F10A.6f.1 13477112 13499084 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon150428   40   IV: 13477112-13477151 Caenorhabditis elegans
Exon150435   123   IV: 13477993-13478115 Caenorhabditis elegans
Exon150441   406   IV: 13478158-13478563 Caenorhabditis elegans
Exon150448   157   IV: 13479656-13479812 Caenorhabditis elegans
Exon150455   415   IV: 13480421-13480835 Caenorhabditis elegans
Exon150462   110   IV: 13481947-13482056 Caenorhabditis elegans
Exon150473   207   IV: 13485527-13485733 Caenorhabditis elegans
Exon150480   246   IV: 13486747-13486992 Caenorhabditis elegans
Exon150489   753   IV: 13487915-13488667 Caenorhabditis elegans
Exon150496   246   IV: 13489486-13489731 Caenorhabditis elegans
Exon150503   133   IV: 13489795-13489927 Caenorhabditis elegans
Exon150537   144   IV: 13497766-13497909 Caenorhabditis elegans
Exon150544   146   IV: 13497960-13498105 Caenorhabditis elegans
Exon150548   45   IV: 13499040-13499084 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y45F10A.6f.1 13477112 13499084 -1

1 Sequence

Length
3171

1 Sequence Ontology Term

Identifier Name Description
transcript