WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y41E3.11a.2 Sequence Name  Y41E3.11a.2
Length (nt)  5405   Chromosome Location  IV: 15040071-15049333
Chromosome . Primary Identifier  IV Chromosome Location . Start  15040071
Chromosome Location . End  15049333 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y41E3.11a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012769 hrpu-1 Y41E3.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y41E3.11a Y41E3.11a 5004   IV: 15040075-15040158

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y41E3.11a.2 15040071 15049333 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon158117   88   IV: 15040071-15040158 Caenorhabditis elegans
Exon158121   111   IV: 15040213-15040323 Caenorhabditis elegans
Exon158124   1114   IV: 15040374-15041487 Caenorhabditis elegans
Exon158127   386   IV: 15041540-15041925 Caenorhabditis elegans
Exon158130   165   IV: 15042436-15042600 Caenorhabditis elegans
Exon158133   985   IV: 15042659-15043643 Caenorhabditis elegans
Exon158137   562   IV: 15044165-15044726 Caenorhabditis elegans
Exon158142   1123   IV: 15045292-15046414 Caenorhabditis elegans
Exon158147   297   IV: 15047323-15047619 Caenorhabditis elegans
Exon158157   574   IV: 15048760-15049333 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y41E3.11a.2 15040071 15049333 1

1 Sequence

Length
5405

1 Sequence Ontology Term

Identifier Name Description
transcript