WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y116A8C.26a.1 Sequence Name  Y116A8C.26a.1
Length (nt)  3960   Chromosome Location  IV: 17078820-17087438
Chromosome . Primary Identifier  IV Chromosome Location . Start  17078820
Chromosome Location . End  17087438 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y116A8C.26a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013803 snx-13 Y116A8C.26 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y116A8C.26a Y116A8C.26a 2823   IV: 17079848-17080009

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y116A8C.26a.1 17078820 17087438 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon166898   1190   IV: 17078820-17080009 Caenorhabditis elegans
Exon166901   154   IV: 17080064-17080217 Caenorhabditis elegans
Exon166904   209   IV: 17080581-17080789 Caenorhabditis elegans
Exon166907   78   IV: 17080835-17080912 Caenorhabditis elegans
Exon166910   351   IV: 17081409-17081759 Caenorhabditis elegans
Exon166913   309   IV: 17082531-17082839 Caenorhabditis elegans
Exon166916   204   IV: 17083644-17083847 Caenorhabditis elegans
Exon166920   126   IV: 17084049-17084174 Caenorhabditis elegans
Exon166923   458   IV: 17085235-17085692 Caenorhabditis elegans
Exon166924   99   IV: 17086337-17086435 Caenorhabditis elegans
Exon166925   242   IV: 17086487-17086728 Caenorhabditis elegans
Exon166927   122   IV: 17086805-17086926 Caenorhabditis elegans
Exon166928   202   IV: 17086975-17087176 Caenorhabditis elegans
Exon166931   216   IV: 17087223-17087438 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y116A8C.26a.1 17078820 17087438 -1

1 Sequence

Length
3960

1 Sequence Ontology Term

Identifier Name Description
transcript