WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y116A8C.36c.1 Sequence Name  Y116A8C.36c.1
Length (nt)  1899   Chromosome Location  IV: 17121724-17125935
Chromosome . Primary Identifier  IV Chromosome Location . Start  17121724
Chromosome Location . End  17125935 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y116A8C.36c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006405 itsn-1 Y116A8C.36 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y116A8C.36c Y116A8C.36c 1899   IV: 17121724-17121786

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y116A8C.36c.1 17121724 17125935 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

5 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon167048   63   IV: 17121724-17121786 Caenorhabditis elegans
Exon167055   631   IV: 17121833-17122463 Caenorhabditis elegans
Exon167058   371   IV: 17123245-17123615 Caenorhabditis elegans
Exon167064   317   IV: 17124202-17124518 Caenorhabditis elegans
Exon167069   517   IV: 17125419-17125935 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y116A8C.36c.1 17121724 17125935 1

1 Sequence

Length
1899

1 Sequence Ontology Term

Identifier Name Description
transcript