WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T28F3.4b.1 Sequence Name  T28F3.4b.1
Length (nt)  1850   Chromosome Location  IV: 17288207-17291733
Chromosome . Primary Identifier  IV Chromosome Location . Start  17288207
Chromosome Location . End  17291733 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T28F3.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012130 slc-17.4 T28F3.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T28F3.4b T28F3.4b 1179   IV: 17288881-17288903

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T28F3.4b.1 17288207 17291733 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon167611   363   IV: 17288207-17288569 Caenorhabditis elegans
Exon167613   88   IV: 17288617-17288704 Caenorhabditis elegans
Exon167615   154   IV: 17288750-17288903 Caenorhabditis elegans
Exon167618   133   IV: 17289353-17289485 Caenorhabditis elegans
Exon167620   153   IV: 17289529-17289681 Caenorhabditis elegans
Exon167622   134   IV: 17289925-17290058 Caenorhabditis elegans
Exon167624   178   IV: 17290160-17290337 Caenorhabditis elegans
Exon167626   234   IV: 17290673-17290906 Caenorhabditis elegans
Exon167628   72   IV: 17290962-17291033 Caenorhabditis elegans
Exon167630   138   IV: 17291081-17291218 Caenorhabditis elegans
Exon167632   50   IV: 17291401-17291450 Caenorhabditis elegans
Exon167634   153   IV: 17291581-17291733 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T28F3.4b.1 17288207 17291733 -1

1 Sequence

Length
1850

1 Sequence Ontology Term

Identifier Name Description
transcript