WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C30H6.6.1 Sequence Name  C30H6.6.1
Length (nt)  2108   Chromosome Location  IV: 17376427-17379310
Chromosome . Primary Identifier  IV Chromosome Location . Start  17376427
Chromosome Location . End  17379310 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C30H6.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001811 haf-1 C30H6.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C30H6.6 C30H6.6 2034   IV: 17376436-17376585

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C30H6.6.1 17376427 17379310 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168357   159   IV: 17376427-17376585 Caenorhabditis elegans
Exon168358   109   IV: 17376630-17376738 Caenorhabditis elegans
Exon168359   228   IV: 17377191-17377418 Caenorhabditis elegans
Exon168360   338   IV: 17377471-17377808 Caenorhabditis elegans
Exon168361   147   IV: 17377857-17378003 Caenorhabditis elegans
Exon168362   82   IV: 17378051-17378132 Caenorhabditis elegans
Exon168363   581   IV: 17378177-17378757 Caenorhabditis elegans
Exon168364   200   IV: 17378804-17379003 Caenorhabditis elegans
Exon168365   264   IV: 17379047-17379310 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C30H6.6.1 17376427 17379310 1

1 Sequence

Length
2108

1 Sequence Ontology Term

Identifier Name Description
transcript