WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F16B3.1a.1 Sequence Name  F16B3.1a.1
Length (nt)  3318   Chromosome Location  V: 1289373-1299332
Chromosome . Primary Identifier  V Chromosome Location . Start  1289373
Chromosome Location . End  1299332 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F16B3.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001171 egl-2 F16B3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F16B3.1a F16B3.1a 2871   V: 1289696-1289855

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F16B3.1a.1 1289373 1299332 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon171901   483   V: 1289373-1289855 Caenorhabditis elegans
Exon171903   338   V: 1290013-1290350 Caenorhabditis elegans
Exon171905   285   V: 1291338-1291622 Caenorhabditis elegans
Exon171907   598   V: 1291666-1292263 Caenorhabditis elegans
Exon171909   175   V: 1292314-1292488 Caenorhabditis elegans
Exon171912   325   V: 1293124-1293448 Caenorhabditis elegans
Exon171914   114   V: 1293495-1293608 Caenorhabditis elegans
Exon171916   124   V: 1293654-1293777 Caenorhabditis elegans
Exon171918   24   V: 1294497-1294520 Caenorhabditis elegans
Exon171920   173   V: 1295244-1295416 Caenorhabditis elegans
Exon171923   116   V: 1297529-1297644 Caenorhabditis elegans
Exon171924   129   V: 1298404-1298532 Caenorhabditis elegans
Exon171926   113   V: 1298578-1298690 Caenorhabditis elegans
Exon171928   118   V: 1298950-1299067 Caenorhabditis elegans
Exon171931   203   V: 1299130-1299332 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F16B3.1a.1 1289373 1299332 -1

1 Sequence

Length
3318

1 Sequence Ontology Term

Identifier Name Description
transcript