WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R12A1.2a.1 Sequence Name  R12A1.2a.1
Length (nt)  1631   Chromosome Location  V: 1393112-1411559
Chromosome . Primary Identifier  V Chromosome Location . Start  1393112
Chromosome Location . End  1411559 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R12A1.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004925 snt-5 R12A1.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R12A1.2a R12A1.2a 1377   V: 1393366-1393449

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R12A1.2a.1 1393112 1411559 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon172048   338   V: 1393112-1393449 Caenorhabditis elegans
Exon172052   115   V: 1394615-1394729 Caenorhabditis elegans
Exon172056   172   V: 1394780-1394951 Caenorhabditis elegans
Exon172060   250   V: 1394999-1395248 Caenorhabditis elegans
Exon172064   208   V: 1395718-1395925 Caenorhabditis elegans
Exon172068   119   V: 1395983-1396101 Caenorhabditis elegans
Exon172072   106   V: 1397130-1397235 Caenorhabditis elegans
Exon172078   124   V: 1402642-1402765 Caenorhabditis elegans
Exon172080   69   V: 1406862-1406930 Caenorhabditis elegans
Exon172083   130   V: 1411430-1411559 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R12A1.2a.1 1393112 1411559 -1

1 Sequence

Length
1631

1 Sequence Ontology Term

Identifier Name Description
transcript