WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54E2.3l.1 Sequence Name  F54E2.3l.1
Length (nt)  9783   Chromosome Location  V: 2782578-2794344
Chromosome . Primary Identifier  V Chromosome Location . Start  2782578
Chromosome Location . End  2794344 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54E2.3l.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004130 ketn-1 F54E2.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54E2.3l F54E2.3l 9783   V: 2782578-2782585

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54E2.3l.1 2782578 2794344 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon175340   8   V: 2782578-2782585 Caenorhabditis elegans
Exon175357   127   V: 2782844-2782970 Caenorhabditis elegans
Exon175367   230   V: 2783023-2783252 Caenorhabditis elegans
Exon175378   748   V: 2783366-2784113 Caenorhabditis elegans
Exon175389   183   V: 2784160-2784342 Caenorhabditis elegans
Exon175404   123   V: 2784836-2784958 Caenorhabditis elegans
Exon175415   7569   V: 2785054-2792622 Caenorhabditis elegans
Exon175426   204   V: 2792670-2792873 Caenorhabditis elegans
Exon175437   195   V: 2792920-2793114 Caenorhabditis elegans
Exon175448   105   V: 2793907-2794011 Caenorhabditis elegans
Exon175459   291   V: 2794054-2794344 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54E2.3l.1 2782578 2794344 -1

1 Sequence

Length
9783

1 Sequence Ontology Term

Identifier Name Description
transcript