WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39H10A.2a.1 Sequence Name  Y39H10A.2a.1
Length (nt)  2232   Chromosome Location  V: 3761139-3766315
Chromosome . Primary Identifier  V Chromosome Location . Start  3761139
Chromosome Location . End  3766315 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39H10A.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021479 oac-55 Y39H10A.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39H10A.2a Y39H10A.2a 2223   V: 3761139-3761285

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39H10A.2a.1 3761139 3766315 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon177718   147   V: 3761139-3761285 Caenorhabditis elegans
Exon177720   202   V: 3761539-3761740 Caenorhabditis elegans
Exon177722   136   V: 3762573-3762708 Caenorhabditis elegans
Exon177725   128   V: 3762765-3762892 Caenorhabditis elegans
Exon177726   94   V: 3762943-3763036 Caenorhabditis elegans
Exon177728   178   V: 3763093-3763270 Caenorhabditis elegans
Exon177730   94   V: 3764204-3764297 Caenorhabditis elegans
Exon177733   371   V: 3764345-3764715 Caenorhabditis elegans
Exon177736   227   V: 3764762-3764988 Caenorhabditis elegans
Exon177739   112   V: 3765351-3765462 Caenorhabditis elegans
Exon177742   116   V: 3765508-3765623 Caenorhabditis elegans
Exon177745   214   V: 3765836-3766049 Caenorhabditis elegans
Exon177750   213   V: 3766103-3766315 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39H10A.2a.1 3761139 3766315 1

1 Sequence

Length
2232

1 Sequence Ontology Term

Identifier Name Description
transcript