WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R08F11.1a.1 Sequence Name  R08F11.1a.1
Length (nt)  2995   Chromosome Location  V: 3777297-3784217
Chromosome . Primary Identifier  V Chromosome Location . Start  3777297
Chromosome Location . End  3784217 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R08F11.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019965 R08F11.1 R08F11.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R08F11.1a R08F11.1a 2460   V: 3777828-3778013

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R08F11.1a.1 3777297 3784217 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon177788   717   V: 3777297-3778013 Caenorhabditis elegans
Exon177790   91   V: 3779128-3779218 Caenorhabditis elegans
Exon177792   339   V: 3779273-3779611 Caenorhabditis elegans
Exon177794   73   V: 3780030-3780102 Caenorhabditis elegans
Exon177796   201   V: 3780148-3780348 Caenorhabditis elegans
Exon177799   108   V: 3780563-3780670 Caenorhabditis elegans
Exon177800   105   V: 3781221-3781325 Caenorhabditis elegans
Exon177801   302   V: 3781373-3781674 Caenorhabditis elegans
Exon177802   154   V: 3781723-3781876 Caenorhabditis elegans
Exon177803   188   V: 3781929-3782116 Caenorhabditis elegans
Exon177804   484   V: 3782459-3782942 Caenorhabditis elegans
Exon177805   89   V: 3783356-3783444 Caenorhabditis elegans
Exon177806   144   V: 3784074-3784217 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R08F11.1a.1 3777297 3784217 -1

1 Sequence

Length
2995

1 Sequence Ontology Term

Identifier Name Description
transcript