WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:T06E4.3a Sequence Name  T06E4.3a
Length (nt)  7596   Chromosome Location  V: 9634980-9635177
Chromosome . Primary Identifier  V Chromosome Location . Start  9634980
Chromosome Location . End  9635177
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T06E4.3a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE25103 ATL-1, isoform a 292.6 2531 Caenorhabditis elegans
 

Other

23 RNAi

WormBase ID
WBRNAi00001871
WBRNAi00052654
WBRNAi00107902
WBRNAi00018299
WBRNAi00097003
WBRNAi00097012
WBRNAi00097011
WBRNAi00107903
WBRNAi00065645
WBRNAi00098069
WBRNAi00098068
WBRNAi00087556
WBRNAi00098067
WBRNAi00062958
WBRNAi00062960
WBRNAi00078180
WBRNAi00078179
WBRNAi00078178
WBRNAi00087557
WBRNAi00103069
WBRNAi00078177
WBRNAi00097005
WBRNAi00097013

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:T06E4.3a 9634980 9635177 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000226 atl-1 T06E4.3 Caenorhabditis elegans

18 Locations


Feature . Primary Identifier
Start End Strand
CDS:T06E4.3a 9634980 9635177 -1
CDS:T06E4.3a 9635226 9635906 -1
CDS:T06E4.3a 9635955 9636080 -1
CDS:T06E4.3a 9636339 9636992 -1
CDS:T06E4.3a 9637172 9638200 -1
CDS:T06E4.3a 9638249 9638380 -1
CDS:T06E4.3a 9638428 9638961 -1
CDS:T06E4.3a 9640749 9641052 -1
CDS:T06E4.3a 9641101 9641393 -1
CDS:T06E4.3a 9641438 9641648 -1
CDS:T06E4.3a 9641698 9643020 -1
CDS:T06E4.3a 9643065 9644143 -1
CDS:T06E4.3a 9644191 9644418 -1
CDS:T06E4.3a 9644464 9644946 -1
CDS:T06E4.3a 9644995 9645074 -1
CDS:T06E4.3a 9645119 9645183 -1
CDS:T06E4.3a 9645232 9645333 -1
CDS:T06E4.3a 9645381 9645454 -1

1 Sequence

Length
7596

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T06E4.3a.2 T06E4.3a.2 7759   V: 9634849-9645595
Transcript:T06E4.3a.1 T06E4.3a.1 7735   V: 9634861-9645474