WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F46B6.5c.1 Sequence Name  F46B6.5c.1
Length (nt)  2708   Chromosome Location  V: 9779616-9783063
Chromosome . Primary Identifier  V Chromosome Location . Start  9779616
Chromosome Location . End  9783063 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F46B6.5c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009770 F46B6.5 F46B6.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F46B6.5c F46B6.5c 2340   V: 9779964-9780158

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F46B6.5c.1 9779616 9783063 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon193590   543   V: 9779616-9780158 Caenorhabditis elegans
Exon193593   65   V: 9780205-9780269 Caenorhabditis elegans
Exon193600   88   V: 9780622-9780709 Caenorhabditis elegans
Exon193605   573   V: 9780754-9781326 Caenorhabditis elegans
Exon193610   109   V: 9781424-9781532 Caenorhabditis elegans
Exon193615   251   V: 9781578-9781828 Caenorhabditis elegans
Exon193620   207   V: 9781885-9782091 Caenorhabditis elegans
Exon193625   711   V: 9782135-9782845 Caenorhabditis elegans
Exon193629   161   V: 9782903-9783063 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F46B6.5c.1 9779616 9783063 -1

1 Sequence

Length
2708

1 Sequence Ontology Term

Identifier Name Description
transcript